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- THE LINUX REVIEW
- Before you download... Your source for Linux and Open Source news and software reviews.
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Software
- Linux Waves Software Forum
- This is a forum where Linux users can discuss about Linux software topics and ask or answer questions.
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Software : Applications
- AMMP
- A modern full-featured molecular mechanics, dynamics and modeling program. It can
manipulate both small molecules and macromolecules including proteins, nucleic acids and
other polymers
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- ANA
- A free, extensive, interactive data and image processing software package and language for
32-bit computers. The authors use ANA for data processing associated with their scientific
research
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- as-gps
- Contains a basic support library for accessing the inexpensive ($20) Aisin-Seiki GPS
Module
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- Autopilot
- A flexible infrastructure for real-time adaptive control of parallel and distributed computing
resources
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- blif2vhdl
- A collection of free - public domain or shareware - VHDL tools, models and
documentationweb
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- EGO
- a program to perform molecular dynamics calculations on parallel as well as on sequential
computers. Supported parallel machines include the CRAY-T3E, IBM-SP2, Parsytec-CC
under PARIX and inhomogeneous clusters of UNIX workstations under PVM or MPI
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- f/Calc
- A utility for amateur and professional photographers that calculates optical formulę
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- ffGraph
- A C++ class library to create, manipulate and display 2 or 3 dimensional directed graphs.
Graphs can be loaded and saved in a slightly extended sgraph file format
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- fplan
- A freely distributable application (with source code) designed to assist general aviation pilots
in creating flight plans for cross country flights in powered aircraft
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- Gamma
- An efficient communication software for message passing on Fast Ethernet and Gigabit
Ethernet clusters of uniprocessor PCs
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- GiNaC
- An open framework for symbolic computation within the C++ programming language
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- Grading
- A simple but idiot-proof quasi-spreadsheet which enables teachers to record and analyse
class marks for a number of assessment items.
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- Grany-3
- A full-featured cellular automaton simulator, made in C++ with Gtk--,flex++/bison++,
doxygen and gettext
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- GraphEd
- An Interactive, Extensible Editor For Graphs and Graph Grammars with lots of Layout and
other Algorithms
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- GREEDY
- A classification program that classifies d-dimensional data sets based on training data with
known class assignment
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- gRMA
- A free, graphical tool for doing Rate Monotonic Analysis of real-time systems
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- GtkGraph
- A simple graphing calculator written for X Windows using the Gtk widget set
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- Isabelle
- A generic theorem prover, developed at the University of Cambridge. New logics are
introduced by specifying their syntax and rules of inference; proof procedures can be
expressed using tactics and tacticals
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- JNL
- Gives you the most important numerical functions missing in Java: a numerical type class;
Complex; and three categories of numerical functions classes -- the special functions
class, the linear algebra classes and the statistics class
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- KeLP
- A C++ library for implementing portable irregular scientific computations on parallel
computers
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- LAuRA
- Little Audiogram Recorder/Archiver - is an application for managing the results of
subjective hearing tests.
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- LEGO
- An interactive proof development system (proof assistant)
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- LK
- A handy tool for viewing and exploring large sparse matrices. Using MatView, a sparse
matrix with millions of elements can be reduced to a graphically viewable size for overviews
of the high-level structure, or a detailed view can be obtained by zooming in and navigating
through small regions of the matrix
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- MatView
- A handy tool for viewing and exploring large sparse matrices. Using MatView, a sparse
matrix with millions of elements can be reduced to a graphically viewable size for overviews
of the high-level structure, or a detailed view can be obtained by zooming in and navigating
through small regions of the matrix
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- Mseti
- Lets a number of SETI packets at a time to run through SETI@home, and sends them back
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- Muac
- A fast algorithm (n log(n)) for calculating the 2 dimensional KS test. Python code is used to
illustrate and test the algorithm
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- MV++
- A small, efficient, set of concrete vector and simple matrix classes for numerical computing. It
is not intended as a general vector container class, but rather designed specifically for
optimized numerical computations on RISC and pipelined architectures
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- OOMMF
- Object Oriented MicroMagnetic Framework
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- Pipewave
- A suite of programs for digital signal processing and auditory modelling
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- PM3D
- Transform 3d data to gray(scale) maps and newly to colours maps too! Output is postscript
file
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- POOMA
- Parallel Object-Oriented Methods and Applications: an object-oriented framework for
applications in computational science requiring high-performance parallel computers. It is a
library of C++ classes designed to represent common abstractions in these applications
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- PulseTLM
- A full featured 3D Transmission Line Matrix (TLM) simulator that is published under the GNU
General Public License with an input language that allows a wide variety of EM systems to
be solved without recompiling the simulator
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- QGraphi
- Create/edit any kind of graph (set of arcs and nodes) and then solve different classes of
problem on them (e.g. Minimum Path, Maximum Flow, TSP, Minimum cost flow)
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- rmap
- A package that will allow you to generate images of the earth from a distance or fairly zoomed
in. The code is a small C bianary that reads a datafile of vectors to generate the image. The
actual image is generated from the libgd library, which will either generate a gif, png, or jpeg
based on the version of libgd and auxilary libs you have
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- RRDtool
- A system to store and display time-series data (i.e. network bandwidth, machine-room
temperature, server load average)
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- Schelab
- An OO library based on Christian Queinnec's Meroon-V3. It is intended to become the
kernel of a matrix algebra system
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- Scientific Analytical Processing
- Applix TM1 OLAp for Linux, the first and only OLAP solution for enterprise-wide financial
decision support on the Linux operating system.
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- Seismic Analysis Code
- A general purpose interactive program designed for the study of sequential signals,
especially timeseries data
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- SETI@Home Client
- A scientific experiment that will harness the power of hundreds of thousands of
Internet-connected computers in the Search for Extra-Terrestrial Intelligence (SETI)
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- SigLab
- Calculator specially designed for working on signals. You may load, save or generate
signals, do various operations on and between the signals (addition, ..., log, abs, sin, ...,
filtering, convolution, fft, correlation
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- Simpla
- Concept language for use in teaching children and adults with no programming experience or
computer knowledge whatsoever. Intent is to have a language which is capable of many
basic scripting language tasks without adding excess complexity
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- sixpack
- A Bibliography and Reference Manager
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- SMV
- A tool for checking finite state systems against specifications in the temporal logic CTL
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- SparsePy
- Defines a Python class that implements sparse matrices using Numerical Python's multiarray
objects to store the data
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- Steric
- For the calculation of the Steric Size of Molecules about a Point in terms of their Cone Angles
and Solid Angles, as well as their total Volumes and Projected Areas
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- Swiss PDBViewer
- An application that provides a user friendly interface allowing to analyse several proteins at
the same time. The proteins can be superimposed in order to deduce structural alignments
and compare their active sites or any other relevant parts. Amino acid mutations, H-bonds,
angles and distances between atoms are easy to obtain thanks to the intuitive graphic and
menu interface.
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- Tempest-AM
- Generates AM radio signal on your monitor in the form of patterns. This pattern causes high
resolution monitors to transmit the AM signal. This signal can be picked up by simple
handheld radio from a distance
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- Tk-SETI
- A GUI front-end to the SETI@Home client for UNIX. It can passively monitor an already
running setiathome client, start/stop/pause the client when TkSeti starts and exits, and can
manually run/kill/pause/continue the setiathome client.
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- tnimage
- Scientific image analysis software for Unix and DOS
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- ToyTLM
- A 3 dimensional Transmission Line Matrix (TLM) code that is published under the GPL
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- WinMGM
- A molecular graphism program. It allow to display and manipulate one or more molecules.
You can add ribbons, solvent accessible surface, hydrophobic/electrostatic/custom
isopotentials..., use various display modes. A full screen mode, faster, is also available
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- WIP
- An interactive package with a simple to use command line user interface used to produce
high quality graphical output
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- XtalView
- A crystallographic software package for fitting electron density maps and solving structures
by MIR and MAD
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Software : Databases
- C/BASE 4GL
- A free powerful application development tool and database engine
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- Domino
- Domino is a combines integrated collaborative
functionality with Linux' low cost-of-deployment and high reliability benefits to enable
organizations worldwide to gain access to powerful messaging, knowledge management and
Web application development capabilities
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- GNOME-DB
- A complete suite of libraries/applications that allow an easy access to a wide range of
database systems by making use of the capabilities provided by CORBA for communication
between separated modules. The CORBA implementation used by GNOME-DB is ORBit, the
GNOME Project's ORB
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- Max for Linux
- Allows you to compile and run Xbase code on the Linux platform. In addition to
classic character-based applications, Max also supports Web systems.
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- MDB Tools
- A planned set of libraries and utilities to facilitate exporting data from MS Access databases
(mdb files) into a multiuser database such as Oracle, Sybase, DB2, Informix, MySQL,
Postgresql, or similar.
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- NetSQL
- NetSQL is a light and robust SQL database server for Linux and Sun Solaris. Because it can
be configured on a virtual web server, it enables every Webmaster with a virtual web site to
host database applications. Commercial version is also available.
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- ObjecTrieve
- an advanced ISAM file manager, in the form of a library of C function that
efficiently manage ISAM files. ObjecTrieve allows a developer to build robust database management applications that allow direct and fast access to records. Using ObjecTrieve, applications can be built with C or C++ to handle non-conventional, unstructured and large
data, in addition to conventional and structured data that fits a record-and-file metaphor.
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- Qtime
- Qddb Time Reporting System
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- rdb
- A freeware reliable database library
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- readyBase
- A dynamic embeddable database library with a high level C API
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- SQLkit
- A package that will allow you to write FlagShip programs capable of communicating with an
external SQL database
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- SQLWork
- A port of Oracle's SQL Worksheet
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- X2c
- Portable Xbase Compiler
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- FLORID
- F-LOgic Reasoning In Databases: a deductive object-oriented database prototype
employing F-Logic as data definition and query language.
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- FramerD
- A portable distributed object-oriented database designed to support the maintenance and
sharing of knowledge bases
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- GigaBASE
- An Object-Relational Database Management System. GigaBASE inherits most of the
features of FastDB, but uses page pool instead of direct mapping of file on virtual memory
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- H-PCTE
- A partial, fast implementation of the object management system which is specified in
the international standard ECMA -149 /158
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- KE Texpress
- A multi-user database management system, supports relational, object oriented, free text
and multimedia data with high speed retrieval from massive collections of information
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- LINCKS
- An object-centred multi-user database system developed for complex information system
applications where editing and browsing of information in the database is of paramount
importance
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- MOOD-SX
- An object-oriented database management system program capable of concurrent,
multi-client database services on the Internet
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- Objectivity/DB
- A commercial multi-threaded database engine with a rich set of development and
administration tools
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- ozone
- A fully featured, object-oriented database management system completely implemented in
Java and distributed under an open source license.
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- Polyhedra
- Common Relational (SQL) Data Model
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- Versant ODBMS
- a commercial object database management system for multi-user, distributed application
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- dbMetrix
- A copy-lefted, open-sourced SQL database tool based on the GTK widget set and supports
multiple, simultaneous connections to various SQL servers such as MySQL, mSQL and
PostgreSQL
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- Foxxess
- A database management front end using the fOX/XClass library
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- gASQL
- A GUI to view and manipulate the structure and the contents of a PostgreSQL database
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- GtkPGA
- Uses the Gtk graphical environment to interface to the PostgreSQL Database Management
System
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- GtkSQL
- A graphical query tool (like PostgreSQL's psql). It is released under the GNU GPL license,
and was developped using Gtk+ and PostgreSQL
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- JSQLVis
- Does a user-speciied SELECT query on a SQL database. The data returned is interpreted
as float values and plotted. The database column to use for each axis is specified by the
user. The plot layout variables can be modified by the user. All plots have automatically
selected scales
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- kiosk
- A beta MySQL client that can be used to facilitate management of MySQL databases
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- KPSQL
- An Interactive Query Tool for PostgreSQL (KDE); a tool similar to Oracle's Server Manager
motif worksheet and Microsoft's Windows based SQL Server iSQL query tool.
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- KSql
- A KDE database client. It was originaly mySQL specific, but uses now plugins to access
databases like miniSQL and PostgreSQL
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- Orac
- An Oracle 7.3 and Oracle 8 DBA GUI tool for Perl/Tk
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- myGDE
- A graphical interface to a mySQL server. It was written using the GTK toolkit and the mysql C
API.
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- A_DBC
- Abstract Data Base Connector is abstact OOP way to connect to several databases:
DBE/ODBC (Under Win95/NT) PostGre, mSQL, MySQL, Beagle etc (under UNIX)
Distribution: GPL
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- dbMan
- A simple SQL monitor for common database system (PgSQL, Oracle, MySQL etc.). It's based
on Perl, Tk and DBI interfaces
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- Gentry
- GTK Entry: a program to do data entry into a MySQL database using an GTK GUI
application
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- Oracle Session Manager
- An X11 program to monitor sessions on the database, what they are doing, and what kind of
resources they are consuming
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- pybliographer
- A tool for managing bibliographic databases. It currently supports BibTeX files for reading
and writing, and can also read Ovid files
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- SybSQL
- An easy-to-use X11 (Qt) based SQL editor that helps you compose, execute SQL
commands and view or save results. SybSQL supports connections to Sybase Adaptive
Server Enteriprise as well as MS SQL 6.5 ( not tested on SQL 7.) This software was written
using Qt library.
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- Cardfile
- A simple screen oriented database manager. It does have some rudimentary file formatting
and printing capabilities
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- CodeBase 6
- A High-speed xBase compatible database engine that's Royalty free, small and portable.
Works with C/C++, Visual Basic & Delphi under standalone or client/server
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- DB-J
- A database shell. You can centralize your connections and queries ordered by projects in
one place. You can perform queries and view results in a table
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- Phasme
- An application-oriented DBMS kernel developed to meet both new novel information
systems'requirements and durability requirements (hardware, standards, application)
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